CONTENTS

1. Tricks in organic reactions
2. Instructions to run Sparky in Mac OSX
3. Instructions to run NMRpipe in Mac OSX
4. Gaussian Troubleshooting: Identical Atom Ordering

Thursday, December 30, 2010

Instructions to run Sparky in Mac OSX
Step 1 - Run dmg file, which also opens the terminal from X11.
Step 2 - Open Finder, Open Sparky 3.115, Right click on Sparky icon and click on “Show Package Contents”
Step 3 - Go to Contents/Resources/bin, click on any file to get the path
Step 4 - Take the path in X11 terminal to reach there and execute file by “./filename” e.g.
./vnmr2ucsf /Users/Chemist/Desktop/procpar
/Users/Chemist/Desktop/phasefile
/Users/Chemist/Desktop/filename.ucsf H H
Step 5 - filename.ucsf can be opened using sparky. Methods for Processing/Integrating/Labelling is documented in manual

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